PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_C1D7139D7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 95aa    MW: 11202.6 Da    PI: 9.2539
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_C1D7139D7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB698.3e-2247944493
                  NF-YB 44 sfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93
                            f++sea dkcqrekrk in ddllwa+atlGfe+y+epl  yl+kyre+
  Traes_1DS_C1D7139D7.1 47 CFIASEARDKCQREKRKIINVDDLLWAMATLGFEEYIEPL--YLQKYREI 94
                           69*************************************8..9*****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-174893IPR009072Histone-fold
PfamPF008087.9E-64874IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.16E-134893IPR009072Histone-fold
PRINTSPR006159.9E-55775No hitNo description
PRINTSPR006159.9E-57694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
LRQRQGAGQV PTHRQHRQHH EEGHPGQRQD RQGRQGDLAG VRLGVHCFIA SEARDKCQRE  60
KRKIINVDDL LWAMATLGFE EYIEPLYLQK YREIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-1548934693NF-YB
4awl_B4e-1548934794NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-1548934794NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090781e-102BT009078.1 Triticum aestivum clone wkm1c.pk0002.d7:fis, full insert mRNA sequence.
GenBankKM0787351e-102KM078735.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A2) mRNA, complete cds.
GenBankKM0787361e-102KM078736.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-B2) mRNA, complete cds.
GenBankKM0787371e-102KM078737.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909552.19e-22PREDICTED: nuclear transcription factor Y subunit B-like isoform X2
RefseqXP_010909551.11e-21PREDICTED: nuclear transcription factor Y subunit B-like isoform X1
RefseqXP_008783687.11e-21PREDICTED: nuclear transcription factor Y subunit B-like isoform X2
RefseqXP_008783689.11e-21PREDICTED: nuclear transcription factor Y subunit B-like isoform X4
RefseqXP_008783686.11e-21PREDICTED: nuclear transcription factor Y subunit B-like isoform X1
RefseqXP_008783685.11e-21PREDICTED: nuclear transcription factor Y subunit B-like isoform X1
RefseqXP_008783684.11e-21PREDICTED: nuclear transcription factor Y subunit B-like isoform X1
RefseqXP_008783683.11e-21PREDICTED: nuclear transcription factor Y subunit B-like isoform X1
RefseqXP_008783688.11e-21PREDICTED: nuclear transcription factor Y subunit B-like isoform X3
SwissprotP252093e-23NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLW5AMZ34e-65W5AMZ3_WHEAT; Uncharacterized protein
STRINGGRMZM2G064426_P024e-21(Zea mays)
STRINGGRMZM5G804893_P024e-21(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-23nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]